Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-539 in AC Brain Sun Cluster 28 Table contains all genes in the AC Brain Sun cluster number 28. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-539 3831 KLC1 kinesin light chain 1 [Source:HGNC Symbol;Acc:6387] zzz999 220359 TIGD3 tigger transposable element derived 3 [Source:HGNC Symbol;Acc:18334] zzz999 54677 CROT carnitine O-octanoyltransferase [Source:HGNC Symbol;Acc:2366] zzz999 11189 CELF3 CUGBP, Elav-like family member 3 [Source:HGNC Symbol;Acc:11967] P T 168667 BMPER BMP binding endothelial regulator [Source:HGNC Symbol;Acc:24154] T 81928 CABLES2 Cdk5 and Abl enzyme substrate 2 [Source:HGNC Symbol;Acc:16143] zzz999 1015 CDH17 cadherin 17, LI cadherin (liver-intestine) [Source:HGNC Symbol;Acc:1756] zzz999 23625 FAM89B family with sequence similarity 89, member B [Source:HGNC Symbol;Acc:16708] zzz999 81577 GFOD2 glucose-fructose oxidoreductase domain containing 2 [Source:HGNC Symbol;Acc:28159] zzz999 285440 CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 [Source:HGNC Symbol;Acc:23198] T 5296 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta) [Source:HGNC Symbol;Acc:8980] T 64101 LRRC4 leucine rich repeat containing 4 [Source:HGNC Symbol;Acc:15586] T 1503 CTPS CTP synthase [Source:HGNC Symbol;Acc:2519] T 23161 SNX13 sorting nexin 13 [Source:HGNC Symbol;Acc:21335] zzz999 55631 LRRC40 leucine rich repeat containing 40 [Source:HGNC Symbol;Acc:26004] T 374291 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7714] zzz999 23644 EDC4 enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:17157] zzz999 157807 CLVS1 clavesin 1 [Source:HGNC Symbol;Acc:23139] T 744 MPPED2 metallophosphoesterase domain containing 2 [Source:HGNC Symbol;Acc:1180] T 6323 SCN1A sodium channel, voltage-gated, type I, alpha subunit [Source:HGNC Symbol;Acc:10585] zzz999 79632 FAM184A family with sequence similarity 184, member A [Source:HGNC Symbol;Acc:20991] zzz999 1630 DCC deleted in colorectal carcinoma [Source:HGNC Symbol;Acc:2701] zzz999 1949 EFNB3 ephrin-B3 [Source:HGNC Symbol;Acc:3228] T 138804 OR13C4 olfactory receptor, family 13, subfamily C, member 4 [Source:HGNC Symbol;Acc:14722] zzz999 92691 TMEM169 transmembrane protein 169 [Source:HGNC Symbol;Acc:25130] T 85403 zzz999 ELL-associated factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96JC9] zzz999 494470 RNF165 ring finger protein 165 [Source:HGNC Symbol;Acc:31696] P T 387104 C6orf174 chromosome 6 open reading frame 174 [Source:HGNC Symbol;Acc:21494] zzz999 125228 C18orf19 chromosome 18 open reading frame 19 [Source:HGNC Symbol;Acc:28346] zzz999 84892 C3orf39 chromosome 3 open reading frame 39 [Source:HGNC Symbol;Acc:25902] zzz999 51046 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:HGNC Symbol;Acc:14269] T 51455 REV1 REV1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14060] zzz999 5463 POU6F1 POU class 6 homeobox 1 [Source:HGNC Symbol;Acc:9224] zzz999 115024 NT5C3L 5'-nucleotidase, cytosolic III-like [Source:HGNC Symbol;Acc:28300] zzz999 5881 RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) [Source:HGNC Symbol;Acc:9803] zzz999 27289 RND1 Rho family GTPase 1 [Source:HGNC Symbol;Acc:18314] zzz999 10046 MAMLD1 mastermind-like domain containing 1 [Source:HGNC Symbol;Acc:2568] T 3298 HSF2 heat shock transcription factor 2 [Source:HGNC Symbol;Acc:5225] T 78999 LRFN4 leucine rich repeat and fibronectin type III domain containing 4 [Source:HGNC Symbol;Acc:28456] zzz999 54839 LRRC49 leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:25965] zzz999 9937 DCLRE1A DNA cross-link repair 1A [Source:HGNC Symbol;Acc:17660] T 10656 KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 [Source:HGNC Symbol;Acc:18117] zzz999 64881 PCDH20 protocadherin 20 [Source:HGNC Symbol;Acc:14257] T 78997 GDAP1L1 ganglioside-induced differentiation-associated protein 1-like 1 [Source:HGNC Symbol;Acc:4213] zzz999 10500 SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:10740] zzz999 63876 PKNOX2 PBX/knotted 1 homeobox 2 [Source:HGNC Symbol;Acc:16714] P T 6632 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa [Source:HGNC Symbol;Acc:11158] zzz999 23504 RIMBP2 RIMS binding protein 2 [Source:HGNC Symbol;Acc:30339] zzz999 57657 HCN3 hyperpolarization activated cyclic nucleotide-gated potassium channel 3 [Source:HGNC Symbol;Acc:19183] zzz999 51760 SYT17 synaptotagmin XVII [Source:HGNC Symbol;Acc:24119] zzz999 9196 KCNAB3 potassium voltage-gated channel, shaker-related subfamily, beta member 3 [Source:HGNC Symbol;Acc:6230] zzz999 9854 C2CD2L C2CD2-like [Source:HGNC Symbol;Acc:29000] zzz999 27034 ACAD8 acyl-CoA dehydrogenase family, member 8 [Source:HGNC Symbol;Acc:87] zzz999 140706 C20orf160 chromosome 20 open reading frame 160 [Source:HGNC Symbol;Acc:16153] zzz999 123263 MTFMT mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:29666] zzz999 57687 VAT1L vesicle amine transport protein 1 homolog (T. californica)-like [Source:HGNC Symbol;Acc:29315] T 6732 SRPK1 SRSF protein kinase 1 [Source:HGNC Symbol;Acc:11305] T 26750 RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 [Source:HGNC Symbol;Acc:10439] zzz999 114787 GPRIN1 G protein regulated inducer of neurite outgrowth 1 [Source:HGNC Symbol;Acc:24835] zzz999 2850 GPR27 G protein-coupled receptor 27 [Source:HGNC Symbol;Acc:4482] zzz999 1952 CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) [Source:HGNC Symbol;Acc:3231] T 24145 PANX1 pannexin 1 [Source:HGNC Symbol;Acc:8599] zzz999 79703 C11orf80 chromosome 11 open reading frame 80 [Source:HGNC Symbol;Acc:26197] zzz999 22869 ZNF510 zinc finger protein 510 [Source:HGNC Symbol;Acc:29161] zzz999 56061 UBFD1 ubiquitin family domain containing 1 [Source:HGNC Symbol;Acc:30565] T 5283 PIGH phosphatidylinositol glycan anchor biosynthesis, class H [Source:HGNC Symbol;Acc:8964] zzz999 23271 CAMSAP1L1 calmodulin regulated spectrin-associated protein 1-like 1 [Source:HGNC Symbol;Acc:29188] P T 2290 FOXG1 forkhead box G1 [Source:HGNC Symbol;Acc:3811] zzz999 56931 DUS3L dihydrouridine synthase 3-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26920] zzz999 84916 CIRH1A cirrhosis, autosomal recessive 1A (cirhin) [Source:HGNC Symbol;Acc:1983] zzz999 84969 TOX2 TOX high mobility group box family member 2 [Source:HGNC Symbol;Acc:16095] zzz999 23026 MYO16 myosin XVI [Source:HGNC Symbol;Acc:29822] zzz999 6691 SPINK2 serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) [Source:HGNC Symbol;Acc:11245] zzz999 1008 CDH10 cadherin 10, type 2 (T2-cadherin) [Source:HGNC Symbol;Acc:1749] T 387509 GPR153 G protein-coupled receptor 153 [Source:HGNC Symbol;Acc:23618] zzz999 83693 HSDL1 hydroxysteroid dehydrogenase like 1 [Source:HGNC Symbol;Acc:16475] T 575 BAI1 brain-specific angiogenesis inhibitor 1 [Source:HGNC Symbol;Acc:943] zzz999 84306 PDCD2L programmed cell death 2-like [Source:HGNC Symbol;Acc:28194] zzz999 283310 OTOGL otogelin-like [Source:HGNC Symbol;Acc:26901] zzz999 57535 KIAA1324 KIAA1324 [Source:HGNC Symbol;Acc:29618] zzz999 7857 SCG2 secretogranin II [Source:HGNC Symbol;Acc:10575] P T 84247 LDOC1L leucine zipper, down-regulated in cancer 1-like [Source:HGNC Symbol;Acc:13343] T 10248 POP7 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) [Source:HGNC Symbol;Acc:19949] zzz999 3906 LALBA lactalbumin, alpha- [Source:HGNC Symbol;Acc:6480] zzz999 91782 CHMP7 CHMP family, member 7 [Source:HGNC Symbol;Acc:28439] T 2617 GARS glycyl-tRNA synthetase [Source:HGNC Symbol;Acc:4162] zzz999 9747 FAM115A family with sequence similarity 115, member A [Source:HGNC Symbol;Acc:22201] T 55250 ELP2 elongation protein 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18248] zzz999 10166 SLC25A15 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 [Source:HGNC Symbol;Acc:10985] T 619279 ZNF704 zinc finger protein 704 [Source:HGNC Symbol;Acc:32291] T 7776 ZNF236 zinc finger protein 236 [Source:HGNC Symbol;Acc:13028] T 91461 PKDCC protein kinase domain containing, cytoplasmic homolog (mouse) [Source:HGNC Symbol;Acc:25123] zzz999 11051 NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870] P T 10363 HMG20A high mobility group 20A [Source:HGNC Symbol;Acc:5001] T 55061 SUSD4 sushi domain containing 4 [Source:HGNC Symbol;Acc:25470] zzz999 7556 ZNF10 zinc finger protein 10 [Source:HGNC Symbol;Acc:12879] T 284339 TMEM145 transmembrane protein 145 [Source:HGNC Symbol;Acc:26912] zzz999 84656 GLYR1 glyoxylate reductase 1 homolog (Arabidopsis) [Source:HGNC Symbol;Acc:24434] zzz999 26036 ZNF451 zinc finger protein 451 [Source:HGNC Symbol;Acc:21091] zzz999 100133941 zzz999 zzz999 zzz999 84102 SLC41A2 solute carrier family 41, member 2 [Source:HGNC Symbol;Acc:31045] zzz999 283576 ZDHHC22 zinc finger, DHHC-type containing 22 [Source:HGNC Symbol;Acc:20106] T 23034 SAMD4A sterile alpha motif domain containing 4A [Source:HGNC Symbol;Acc:23023] zzz999 50512 PODXL2 podocalyxin-like 2 [Source:HGNC Symbol;Acc:17936] zzz999 6656 SOX1 SRY (sex determining region Y)-box 1 [Source:HGNC Symbol;Acc:11189] T 3738 KCNA3 potassium voltage-gated channel, shaker-related subfamily, member 3 [Source:HGNC Symbol;Acc:6221] zzz999 283417 DPY19L2 dpy-19-like 2 (C. elegans) [Source:HGNC Symbol;Acc:19414] zzz999 29089 UBE2T ubiquitin-conjugating enzyme E2T (putative) [Source:HGNC Symbol;Acc:25009] zzz999 26122 EPC2 enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:24543] zzz999 8732 RNGTT RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:10073] zzz999 64062 RBM26 RNA binding motif protein 26 [Source:HGNC Symbol;Acc:20327] zzz999 357 SHROOM2 shroom family member 2 [Source:HGNC Symbol;Acc:630] T 22990 PCNX pecanex homolog (Drosophila) [Source:HGNC Symbol;Acc:19740] P T 124925 SEZ6 seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:15955] zzz999 167359 zzz999 Serine/threonine-protein kinase NIM1 [Source:UniProtKB/Swiss-Prot;Acc:Q8IY84] zzz999 125336 LOXHD1 lipoxygenase homology domains 1 [Source:HGNC Symbol;Acc:26521] zzz999 56915 EXOSC5 exosome component 5 [Source:HGNC Symbol;Acc:24662] zzz999 219743 TYSND1 trypsin domain containing 1 [Source:HGNC Symbol;Acc:28531] T 22986 SORCS3 sortilin-related VPS10 domain containing receptor 3 [Source:HGNC Symbol;Acc:16699] zzz999 9213 XPR1 xenotropic and polytropic retrovirus receptor 1 [Source:HGNC Symbol;Acc:12827] T 4926 NUMA1 nuclear mitotic apparatus protein 1 [Source:HGNC Symbol;Acc:8059] zzz999 64145 ZFYVE20 zinc finger, FYVE domain containing 20 [Source:HGNC Symbol;Acc:20759] T 222962 SLC29A4 solute carrier family 29 (nucleoside transporters), member 4 [Source:HGNC Symbol;Acc:23097] zzz999 10021 HCN4 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 [Source:HGNC Symbol;Acc:16882] zzz999 338324 S100A7A S100 calcium binding protein A7A [Source:HGNC Symbol;Acc:21657] T 163404 zzz999 Lipid phosphate phosphatase-related protein type 5 [Source:UniProtKB/Swiss-Prot;Acc:Q32ZL2] T 92400 RBM18 RNA binding motif protein 18 [Source:HGNC Symbol;Acc:28413] zzz999 55715 DOK4 docking protein 4 [Source:HGNC Symbol;Acc:19868] zzz999 23708 GSPT2 G1 to S phase transition 2 [Source:HGNC Symbol;Acc:4622] T 80152 CENPT centromere protein T [Source:HGNC Symbol;Acc:25787] T 381 ARF5 ADP-ribosylation factor 5 [Source:HGNC Symbol;Acc:658] zzz999 30811 HUNK hormonally up-regulated Neu-associated kinase [Source:HGNC Symbol;Acc:13326] T 79007 DBNDD1 dysbindin (dystrobrevin binding protein 1) domain containing 1 [Source:HGNC Symbol;Acc:28455] zzz999 22865 SLITRK3 SLIT and NTRK-like family, member 3 [Source:HGNC Symbol;Acc:23501] zzz999 116225 ZMYND19 zinc finger, MYND-type containing 19 [Source:HGNC Symbol;Acc:21146] zzz999 89890 KBTBD6 kelch repeat and BTB (POZ) domain containing 6 [Source:HGNC Symbol;Acc:25340] P T 11022 TDRKH tudor and KH domain containing [Source:HGNC Symbol;Acc:11713] T 54331 GNG2 guanine nucleotide binding protein (G protein), gamma 2 [Source:HGNC Symbol;Acc:4404] T 221785 ZNF498 zinc finger protein 498 [Source:HGNC Symbol;Acc:21961] T 9142 CXorf1 chromosome X open reading frame 1 [Source:HGNC Symbol;Acc:2562] T 65243 ZNF643 zinc finger protein 643 [Source:HGNC Symbol;Acc:28053] zzz999 29118 DDX25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Source:HGNC Symbol;Acc:18698] zzz999 65010 SLC26A6 solute carrier family 26, member 6 [Source:HGNC Symbol;Acc:14472] zzz999 2596 GAP43 growth associated protein 43 [Source:HGNC Symbol;Acc:4140] zzz999 114795 TMEM132B transmembrane protein 132B [Source:HGNC Symbol;Acc:29397] T 10036 CHAF1A chromatin assembly factor 1, subunit A (p150) [Source:HGNC Symbol;Acc:1910] zzz999 60682 SMAP1 small ArfGAP 1 [Source:HGNC Symbol;Acc:19651] zzz999

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